PH01000957G0300's details annotation
1.Annotation
ICBR annotation: ATP-dependent RNA helicase, putative, expressed
Blast result AT2G28600 : 1.10E-75
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000957
Strand: +
| Region | Start | End |
| gene | 178854 | 183436 |
| mRNA | 178854 | 183436 |
| exon | 178854 | 179887 |
| exon | 180098 | 180885 |
| exon | 180972 | 181060 |
| exon | 181178 | 181277 |
| exon | 181486 | 181737 |
| exon | 182079 | 182248 |
| exon | 182469 | 183436 |
| CDS | 179872 | 179887 |
| CDS | 180098 | 180885 |
| CDS | 180972 | 181060 |
| CDS | 181178 | 181277 |
| CDS | 181486 | 181737 |
| CDS | 182079 | 182248 |
| CDS | 182469 | 182739 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000691 | ornithine carbamoyltransferase activity, phosphoribosyl-AMP cyclohydrolase activity, ornithine_metabolic_process carboxyl- or carbamoyltransferase activity, histone deacetylase activity, histone deacetylation, Histidine_metabolism histidine biosynthetic process, Arginine_and_proline_metabolism cellular amino acid metabolic process, cellular protein metabolic process, amino acid binding, |
| coexpression network | CFinderM001149 | ketol-acid reductoisomerase activity, branched chain family amino acid biosynthetic process, cellular amino acid biosynthetic process, SCY1_SCYL2 (from iTAK) coenzyme binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, Endocytosis |
| coexpression network | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity, histidine biosynthetic process, RNA modification, pseudouridine synthesis, nuclear pore, |
| coexpression network | CFinderM001761 | large ribosomal subunit, intracellular, |
| coexpression network | CFinderM001831 | |
| coexpression network | CFinderM001832 | histone deacetylation, Endocytosis histone deacetylase activity, cellular protein metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity NAD+ ADP-ribosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00270.28 | DEAD | 225 | 355 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
| GO:0008026 | ATP-dependent helicase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.