PH01000285G0860's details annotation
1.Annotation
ICBR annotation: histone deacetylase, putative, expressed
Blast result AT5G63110 : 0.00E+00
Blast annotation: histone deacetylase 6
2.Location
Scaffold: PH01000285
Strand: +
| Region | Start | End |
| gene | 635987 | 640937 |
| mRNA | 635987 | 640937 |
| exon | 635987 | 636932 |
| exon | 638373 | 638813 |
| exon | 638906 | 639048 |
| exon | 639493 | 639583 |
| exon | 639669 | 639803 |
| exon | 640085 | 640937 |
| CDS | 636396 | 636932 |
| CDS | 638373 | 638813 |
| CDS | 638906 | 639048 |
| CDS | 639493 | 639583 |
| CDS | 639669 | 639803 |
| CDS | 640085 | 640108 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000204 | CMGC_CLK (from iTAK) histone deacetylation, ubiquitin ligase complex, histone deacetylase activity, |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM000691 | ornithine carbamoyltransferase activity, phosphoribosyl-AMP cyclohydrolase activity, ornithine_metabolic_process carboxyl- or carbamoyltransferase activity, histone deacetylase activity, histone deacetylation, Histidine_metabolism histidine biosynthetic process, Arginine_and_proline_metabolism cellular amino acid metabolic process, cellular protein metabolic process, amino acid binding, |
| coexpression network | CFinderM000692 | CMGC_CLK (from iTAK) ornithine_metabolic_process histone deacetylation, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM000693 | ornithine_metabolic_process histone deacetylation, protein import into nucleus, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, protein transporter activity, amino acid binding, |
| coexpression network | CFinderM001068 | protein import into nucleus, histone deacetylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) histone deacetylase activity, |
| coexpression network | CFinderM001367 | histone deacetylation, protein import into nucleus, RLK-Pelle_RLCK-VIIa-2 (from iTAK) histone deacetylase activity, |
| coexpression network | CFinderM001832 | histone deacetylation, Endocytosis histone deacetylase activity, cellular protein metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity NAD+ ADP-ribosyltransferase activity, |
| coexpression network | CFinderM001875 | histone deacetylation, histone deacetylase activity, DNA_replication Mismatch_repair Nucleotide_excision_repair DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00850.18 | Hist_deacetyl | 39 | 328 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004407 | histone deacetylase activity |
| GO:0016575 | histone deacetylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.