PH01000442G0350's details annotation
1.Annotation
ICBR annotation: ribosomal protein, putative, expressed
Blast result AT3G49080 : 1.10E-90
Blast annotation: Ribosomal protein S5 domain 2-like superfamily protein
2.Location
Scaffold: PH01000442
Strand: -
| Region | Start | End |
| gene | 213661 | 216819 |
| mRNA | 213661 | 216819 |
| exon | 213661 | 214024 |
| exon | 214278 | 214358 |
| exon | 215067 | 215507 |
| exon | 216150 | 216819 |
| CDS | 213933 | 214024 |
| CDS | 214278 | 214358 |
| CDS | 215067 | 215507 |
| CDS | 216150 | 216786 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001134 | Lysine_biosynthesis regulation of translational initiation, eukaryotic translation initiation factor 3 complex, spliceosomal complex, Ribosome |
| coexpression network | CFinderM001269 | regulation of translational initiation, 'de novo' IMP biosynthetic process, autophagy, phosphoribosylformylglycinamidine cyclo-ligase activity, eukaryotic translation initiation factor 3 complex, cytoplasm, ribosome binding, |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
| coexpression network | CFinderM001749 | phosphoribosylformylglycinamidine cyclo-ligase activity, autophagy, 'de novo' IMP biosynthetic process, cellular protein metabolic process, |
| coexpression network | CFinderM001773 | Group-Pl-3 (from iTAK) phosphoribosylformylglycinamidine cyclo-ligase activity, 'de novo' IMP biosynthetic process, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00380.18 | Ribosomal_S9 | 296 | 416 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S9 | ko03011 | K02996 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.