PH01000154G1540's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT2G37840 : 5.10E-68
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000154
Strand: -
| Region | Start | End |
| gene | 978701 | 986958 |
| mRNA | 978701 | 986958 |
| exon | 978701 | 979404 |
| exon | 979503 | 979573 |
| exon | 979658 | 979931 |
| exon | 980687 | 981063 |
| exon | 981246 | 981475 |
| exon | 981552 | 981624 |
| exon | 982596 | 982885 |
| exon | 983721 | 983763 |
| exon | 984264 | 984369 |
| exon | 984641 | 984734 |
| exon | 985430 | 985494 |
| exon | 985642 | 985700 |
| exon | 985886 | 985889 |
| exon | 986542 | 986958 |
| CDS | 979201 | 979404 |
| CDS | 979503 | 979573 |
| CDS | 979658 | 979931 |
| CDS | 980687 | 981063 |
| CDS | 981246 | 981475 |
| CDS | 981552 | 981624 |
| CDS | 982596 | 982885 |
| CDS | 983721 | 983763 |
| CDS | 984264 | 984369 |
| CDS | 984641 | 984734 |
| CDS | 985430 | 985494 |
| CDS | 985642 | 985700 |
| CDS | 985886 | 985889 |
| CDS | 986542 | 986802 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000408 | Group-Pl-3 (from iTAK) histidine_catabolic_process_to_glutamate_and_formamide hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides, |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
| coexpression network | CFinderM001773 | Group-Pl-3 (from iTAK) phosphoribosylformylglycinamidine cyclo-ligase activity, 'de novo' IMP biosynthetic process, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 20 | 88 |
| PF00069.24 | Pkinase | 90 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.