PH01001577G0380's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G00450 : 2.30E-30
Blast annotation: RNA polymerase II transcription mediators
2.Location
Scaffold: PH01001577
Strand: -
| Region | Start | End |
| gene | 263986 | 270410 |
| mRNA | 263986 | 270410 |
| exon | 263986 | 264185 |
| exon | 264282 | 264330 |
| exon | 264884 | 264951 |
| exon | 265866 | 266129 |
| exon | 267546 | 267695 |
| exon | 268085 | 268138 |
| exon | 269552 | 269872 |
| exon | 270064 | 270410 |
| CDS | 264120 | 264185 |
| CDS | 264282 | 264330 |
| CDS | 264884 | 264951 |
| CDS | 265866 | 266129 |
| CDS | 267546 | 267695 |
| CDS | 268085 | 268138 |
| CDS | 269552 | 269872 |
| CDS | 270064 | 270378 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001030 | protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation, |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001749 | phosphoribosylformylglycinamidine cyclo-ligase activity, autophagy, 'de novo' IMP biosynthetic process, cellular protein metabolic process, |
| coexpression network | CFinderM001834 | phosphopyruvate hydratase complex, TAZ Transcription_Regulator(from iTAK) L-malate dehydrogenase activity, transcription cofactor activity, malate dehydrogenase activity, phosphopyruvate hydratase activity, histone acetyltransferase activity, malate metabolic process, cellular carbohydrate metabolic process, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.