Annotation of co-expression genes

PH01000765G0580's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT4G30790 : 0.00E+00
Blast annotation: -

2.Location

Scaffold: PH01000765
Strand: -

RegionStartEnd
gene342856350000
mRNA342856350000
exon342856343919
exon344772344985
exon345597345820
exon345927346826
exon346984347668
exon348204350000
CDS343563343919
CDS344772344985
CDS345597345820
CDS345927346826
CDS346984347668
CDS348204349177

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001269regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
coexpression networkCFinderM001749phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04108.11APG17153500
PF10377.8ATG119791110

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006914autophagy

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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