CFinderM000117's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nuclear chromosome,2.73E-05GO:0000228
Glycolysis_/_Gluconeogenesis0.009276265KEGG
Ino80_complex0.012008902GO:0031011
ATP citrate synthase activity,0.034087051GO:0003878
phosphoglycerate kinase activity,0.034087051GO:0004618
succinate-CoA ligase (ADP-forming) activity,0.034087051GO:0004775

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000086G1010Succinyl-CoA ligase, alpha subunitAT5G23250 (5.00E-149)
PH01000123G1110phosphoglycerate kinaseAT1G79550 (0.00E+00)
PH01000145G0550histone acetyltransferase of the CBP family 12AT1G16710 (0.00E+00)
PH01000235G0820sister chromatid cohesion 1 protein 4AT5G16270 (5.00E-106)
PH01000244G0890sister chromatid cohesion 1 protein 4AT5G16270 (3.90E-60)
PH01000428G1030-AT3G45830 (0.00E+00)
PH01000734G0060Aluminium induced protein with YGL and LRDR motifsAT5G19140 (1.90E-94)
PH01000954G0660dentin sialophosphoprotein-relatedAT5G07980 (2.10E-37)
PH01001516G0020Duplicated homeodomain-like superfamily proteinAT3G52250 (2.80E-95)
PH01001627G0500-- (-)
PH01002270G0240ATP-dependent helicase family proteinAT1G08060 (1.30E-88)
PH01003159G0070indoleacetic acid-induced protein 16AT3G04730 (2.90E-69)
PH01003425G0070glyceraldehyde-3-phosphate dehydrogenase C subunit 1AT3G04120 (3.00E-158)
PH01004006G0080apyrase 1AT3G04080 (3.00E-109)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000111protein insertion into membrane,
ATP citrate synthase activity,
succinate-CoA ligase (ADP-forming) activity,
regulation_of_anion_transport
voltage-gated anion channel activity,
anion transport,
details
CFinderM000116nuclear chromosome,
riboflavin synthase complex,
riboflavin biosynthetic process,
phosphoglycerate kinase activity,
glycolysis,
Riboflavin_metabolism
details
CFinderM000842Carbon_fixation_in_photosynthetic_organisms
nuclear chromosome,
Ino80_complex
ribulose-phosphate 3-epimerase activity,
helicase activity,
phosphoglycerate kinase activity,
SNF2 Transcription_Regulator(from iTAK)
racemase and epimerase activity, acting on carbohydrates and derivatives,
Pentose_phosphate_pathway
Pentose_and_glucuronate_interconversions
pentose-phosphate shunt,
details
CFinderM000843ribulose-phosphate 3-epimerase activity,
helicase activity,
SNF2 Transcription_Regulator(from iTAK)
racemase and epimerase activity, acting on carbohydrates and derivatives,
pentose-phosphate shunt,
Carbon_fixation_in_photosynthetic_organisms
Pentose_and_glucuronate_interconversions
Pentose_phosphate_pathway
details
CFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
details
CFinderM000913Ribosome
translation,
Ribosome
intracellular,
cullin-RING ubiquitin ligase complex,
structural constituent of ribosome,
ubiquitin protein ligase binding,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
Ubiquitin_mediated_proteolysis
details
CFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
details
CFinderM001175SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
details
CFinderM001409Whirly Transcription_Regulator(from PlantTFDB)
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
phosphatidylinositol N-acetylglucosaminyltransferase activity,
GPI anchor biosynthetic process,
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001569Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
details
CFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001835MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details

4.Expression profilings


Show details about module gene expression profiling