CFinderM000111's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
protein insertion into membrane,0.000191847GO:0051205
ATP citrate synthase activity,0.034122205GO:0003878
succinate-CoA ligase (ADP-forming) activity,0.034122205GO:0004775
regulation_of_anion_transport0.036574368GO:0044070
voltage-gated anion channel activity,0.037895795GO:0008308
anion transport,0.048708726GO:0006820

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000030G1780basic helix-loop-helix (bHLH) DNA-binding superfamily proteinAT1G68920 (3.60E-55)
PH01000086G1010Succinyl-CoA ligase, alpha subunitAT5G23250 (5.00E-149)
PH01000269G0650spermidine synthase 1AT1G23820 (2.00E-145)
PH01000362G0410homolog of yeast oxidase assembly 1 (OXA1)AT5G62050 (4.10E-61)
PH01000653G0700DNA-binding bromodomain-containing proteinAT1G20670 (2.70E-49)
PH01000791G0090Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family proteinAT3G06040 (4.40E-34)
PH01000794G0510wound-responsive family proteinAT1G21610 (3.40E-29)
PH01000839G0460succinate dehydrogenase 5AT1G47420 (4.30E-60)
PH01001030G0210Pre-mRNA splicing Prp18-interacting factorAT1G65660 (5.00E-102)
PH01001580G0330NAD(P)-binding Rossmann-fold superfamily proteinAT2G20360 (1.00E-164)
PH01001621G0230homolog of yeast oxidase assembly 1 (OXA1)AT5G62050 (3.40E-41)
PH01001988G0300-AT5G23490 (8.00E-116)
PH01002135G0300voltage dependent anion channel 1AT3G01280 (2.00E-101)
PH01002251G0250EnolaseAT2G36530 (0.00E+00)
PH01003159G0070indoleacetic acid-induced protein 16AT3G04730 (2.90E-69)
PH01003703G0060GroES-like zinc-binding alcohol dehydrogenase family proteinAT5G63620 (9.00E-165)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000149SET Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
GTnc GlycosylTransferases
mitochondrial inner membrane,
exocyst,
details
CFinderM000452protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
calcium-dependent phospholipid binding,
details
CFinderM000474CAMK_CAMKL-CHK1 (from iTAK)
eukaryotic translation initiation factor 3 complex,
details
CFinderM000712anion transport,
regulation_of_anion_transport
protein insertion into membrane,
mitochondrial outer membrane,
phosphopyruvate hydratase complex,
voltage-gated anion channel activity,
phosphopyruvate hydratase activity,
details
CFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
details
CFinderM001219Jumonji Transcription_Regulator(from iTAK)
NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001469FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
details
CFinderM001790regulation of translational initiation,
ribosome binding,
eukaryotic translation initiation factor 3 complex,
translation initiation factor activity,
details
CFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings


Show details about module gene expression profiling