|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein insertion into membrane, | 0.000191847 | GO:0051205 | | ATP citrate synthase activity, | 0.034122205 | GO:0003878 | | succinate-CoA ligase (ADP-forming) activity, | 0.034122205 | GO:0004775 | | regulation_of_anion_transport | 0.036574368 | GO:0044070 | | voltage-gated anion channel activity, | 0.037895795 | GO:0008308 | | anion transport, | 0.048708726 | GO:0006820 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000030G1780 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | AT1G68920 (3.60E-55) | | PH01000086G1010 | Succinyl-CoA ligase, alpha subunit | AT5G23250 (5.00E-149) | | PH01000269G0650 | spermidine synthase 1 | AT1G23820 (2.00E-145) | | PH01000362G0410 | homolog of yeast oxidase assembly 1 (OXA1) | AT5G62050 (4.10E-61) | | PH01000653G0700 | DNA-binding bromodomain-containing protein | AT1G20670 (2.70E-49) | | PH01000791G0090 | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | AT3G06040 (4.40E-34) | | PH01000794G0510 | wound-responsive family protein | AT1G21610 (3.40E-29) | | PH01000839G0460 | succinate dehydrogenase 5 | AT1G47420 (4.30E-60) | | PH01001030G0210 | Pre-mRNA splicing Prp18-interacting factor | AT1G65660 (5.00E-102) | | PH01001580G0330 | NAD(P)-binding Rossmann-fold superfamily protein | AT2G20360 (1.00E-164) | | PH01001621G0230 | homolog of yeast oxidase assembly 1 (OXA1) | AT5G62050 (3.40E-41) | | PH01001988G0300 | - | AT5G23490 (8.00E-116) | | PH01002135G0300 | voltage dependent anion channel 1 | AT3G01280 (2.00E-101) | | PH01002251G0250 | Enolase | AT2G36530 (0.00E+00) | | PH01003159G0070 | indoleacetic acid-induced protein 16 | AT3G04730 (2.90E-69) | | PH01003703G0060 | GroES-like zinc-binding alcohol dehydrogenase family protein | AT5G63620 (9.00E-165) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000117 | nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
| details | | CFinderM000149 | SET Transcription_Regulator(from iTAK)
DDT Transcription_Regulator(from iTAK)
GTnc GlycosylTransferases
mitochondrial inner membrane,
exocyst,
| details | | CFinderM000452 | protein neddylation,
Trihelix Transcription_Regulator(from PlantTFDB)
cellular protein modification process,
Ubiquitin_mediated_proteolysis
small protein activating enzyme activity,
calcium-dependent phospholipid binding,
| details | | CFinderM000474 | CAMK_CAMKL-CHK1 (from iTAK)
eukaryotic translation initiation factor 3 complex,
| details | | CFinderM000712 | anion transport,
regulation_of_anion_transport
protein insertion into membrane,
mitochondrial outer membrane,
phosphopyruvate hydratase complex,
voltage-gated anion channel activity,
phosphopyruvate hydratase activity,
| details | | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
| details | | CFinderM001219 | Jumonji Transcription_Regulator(from iTAK)
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
| details | | CFinderM001790 | regulation of translational initiation,
ribosome binding,
eukaryotic translation initiation factor 3 complex,
translation initiation factor activity,
| details | | CFinderM001834 | phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
