PH01000086G1010's details annotation
1.Annotation
ICBR annotation: succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed
Blast result AT5G23250 : 5.00E-149
Blast annotation: Succinyl-CoA ligase, alpha subunit
2.Location
Scaffold: PH01000086
Strand: -
| Region | Start | End |
| gene | 691106 | 697885 |
| mRNA | 691106 | 697885 |
| exon | 691106 | 691272 |
| exon | 692231 | 692312 |
| exon | 694220 | 694281 |
| exon | 694825 | 694948 |
| exon | 695025 | 695195 |
| exon | 695688 | 695897 |
| exon | 697059 | 697885 |
| CDS | 691133 | 691272 |
| CDS | 692231 | 692312 |
| CDS | 694220 | 694281 |
| CDS | 694825 | 694948 |
| CDS | 695025 | 695195 |
| CDS | 695688 | 695897 |
| CDS | 697059 | 697265 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02629.18 | CoA_binding | 40 | 133 |
| PF00549.18 | Ligase_CoA | 186 | 307 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Citrate cycle (TCA cycle) | succinyl-CoA synthetase alpha subunit [EC:6.2.1.4;EC:6.2.1.5] | ko00020 | K01899 |
| Propanoate metabolism | succinyl-CoA synthetase alpha subunit [EC:6.2.1.4;EC:6.2.1.5] | ko00640 | K01899 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0003878 | ATP citrate synthase activity |
| GO:0004775 | succinate-CoA ligase (ADP-forming) activity |
| GO:0008152 | metabolic process |
| GO:0048037 | cofactor binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.