PH01000269G0650's details annotation
1.Annotation
ICBR annotation: spermidine synthase, putative, expressed
Blast result AT1G23820 : 2.00E-145
Blast annotation: spermidine synthase 1
2.Location
Scaffold: PH01000269
Strand: -
| Region | Start | End |
| gene | 504922 | 512042 |
| mRNA | 504922 | 512042 |
| exon | 504922 | 505333 |
| exon | 505413 | 505542 |
| exon | 505624 | 505819 |
| exon | 505897 | 505968 |
| exon | 506559 | 506631 |
| exon | 509799 | 509903 |
| exon | 511100 | 511222 |
| exon | 511310 | 511386 |
| exon | 511755 | 512042 |
| CDS | 505268 | 505333 |
| CDS | 505413 | 505542 |
| CDS | 505624 | 505819 |
| CDS | 505897 | 505968 |
| CDS | 506559 | 506631 |
| CDS | 509799 | 509903 |
| CDS | 511100 | 511222 |
| CDS | 511310 | 511386 |
| CDS | 511755 | 511764 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM000712 | anion transport, regulation_of_anion_transport protein insertion into membrane, mitochondrial outer membrane, phosphopyruvate hydratase complex, voltage-gated anion channel activity, phosphopyruvate hydratase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17284.1 | Spermine_synt_N | 33 | 87 |
| PF01564.16 | Spermine_synth | 90 | 277 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | spermidine synthase [EC:2.5.1.16] | ko00270 | K00797 |
| Arginine and proline metabolism | spermidine synthase [EC:2.5.1.16] | ko00330 | K00797 |
| beta-Alanine metabolism | spermidine synthase [EC:2.5.1.16] | ko00410 | K00797 |
| Glutathione metabolism | spermidine synthase [EC:2.5.1.16] | ko00480 | K00797 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.