PH01000653G0700's details annotation
1.Annotation
ICBR annotation: bromodomain domain containing protein, expressed
Blast result AT1G20670 : 2.70E-49
Blast annotation: DNA-binding bromodomain-containing protein
2.Location
Scaffold: PH01000653
Strand: +
| Region | Start | End |
| gene | 450787 | 457885 |
| mRNA | 450787 | 457885 |
| exon | 450787 | 451066 |
| exon | 451628 | 451664 |
| exon | 451857 | 451932 |
| exon | 452024 | 452069 |
| exon | 452167 | 452265 |
| exon | 453897 | 454290 |
| exon | 454432 | 454544 |
| exon | 454780 | 457885 |
| CDS | 450848 | 451066 |
| CDS | 451628 | 451664 |
| CDS | 451857 | 451932 |
| CDS | 452024 | 452069 |
| CDS | 452167 | 452265 |
| CDS | 453897 | 454290 |
| CDS | 454432 | 454544 |
| CDS | 454780 | 455301 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM001219 | Jumonji Transcription_Regulator(from iTAK) NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00439.24 | Bromodomain | 105 | 161 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.