PH01002135G0300's details annotation
1.Annotation
ICBR annotation: isochorismate synthase 1, chloroplast precursor, putative, expressed
Blast result AT3G01280 : 2.00E-101
Blast annotation: voltage dependent anion channel 1
2.Location
Scaffold: PH01002135
Strand: +
| Region | Start | End |
| gene | 180480 | 183935 |
| mRNA | 180480 | 183935 |
| exon | 180480 | 180881 |
| exon | 181013 | 181080 |
| exon | 182077 | 182187 |
| exon | 182418 | 182507 |
| exon | 182581 | 182789 |
| exon | 183509 | 183935 |
| CDS | 180836 | 180881 |
| CDS | 181013 | 181080 |
| CDS | 182077 | 182187 |
| CDS | 182418 | 182507 |
| CDS | 182581 | 182789 |
| CDS | 183509 | 183815 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM000712 | anion transport, regulation_of_anion_transport protein insertion into membrane, mitochondrial outer membrane, phosphopyruvate hydratase complex, voltage-gated anion channel activity, phosphopyruvate hydratase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01459.21 | Porin_3 | 4 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005741 | mitochondrial outer membrane |
| GO:0006820 | anion transport |
| GO:0008308 | voltage-gated anion channel activity |
| GO:0044070 | regulation of anion transport |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.