PH01001988G0300's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G23490 : 8.00E-116
Blast annotation: -
2.Location
Scaffold: PH01001988
Strand: -
| Region | Start | End |
| gene | 236351 | 243974 |
| mRNA | 236351 | 243974 |
| exon | 236351 | 236680 |
| exon | 236944 | 237035 |
| exon | 237156 | 237198 |
| exon | 237326 | 237447 |
| exon | 237529 | 237812 |
| exon | 238796 | 239169 |
| exon | 239329 | 239370 |
| exon | 239752 | 239865 |
| exon | 241754 | 241858 |
| exon | 241937 | 241996 |
| exon | 242085 | 242162 |
| exon | 242242 | 242338 |
| exon | 242439 | 242755 |
| exon | 242876 | 242938 |
| exon | 243384 | 243974 |
| CDS | 236540 | 236680 |
| CDS | 236944 | 237035 |
| CDS | 237156 | 237198 |
| CDS | 237326 | 237447 |
| CDS | 237529 | 237812 |
| CDS | 238796 | 239169 |
| CDS | 239329 | 239370 |
| CDS | 239752 | 239865 |
| CDS | 241754 | 241858 |
| CDS | 241937 | 241996 |
| CDS | 242085 | 242162 |
| CDS | 242242 | 242338 |
| CDS | 242439 | 242755 |
| CDS | 242876 | 242938 |
| CDS | 243384 | 243503 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM000474 | CAMK_CAMKL-CHK1 (from iTAK) eukaryotic translation initiation factor 3 complex, |
| coexpression network | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.