PH01000794G0510's details annotation
1.Annotation
ICBR annotation: wound-responsive family protein, putative, expressed
Blast result AT1G21610 : 3.40E-29
Blast annotation: wound-responsive family protein
2.Location
Scaffold: PH01000794
Strand: +
| Region | Start | End |
| gene | 338303 | 347259 |
| mRNA | 338303 | 347259 |
| exon | 338303 | 339349 |
| exon | 340633 | 340858 |
| exon | 342096 | 342249 |
| exon | 342376 | 342516 |
| exon | 343232 | 343279 |
| exon | 343917 | 344018 |
| exon | 344213 | 344596 |
| exon | 346348 | 346809 |
| exon | 346879 | 347259 |
| CDS | 339175 | 339349 |
| CDS | 340633 | 340858 |
| CDS | 342096 | 342249 |
| CDS | 342376 | 342516 |
| CDS | 343232 | 343279 |
| CDS | 343917 | 344018 |
| CDS | 344213 | 344596 |
| CDS | 346348 | 346809 |
| CDS | 346879 | 347259 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000111 | protein insertion into membrane, ATP citrate synthase activity, succinate-CoA ligase (ADP-forming) activity, regulation_of_anion_transport voltage-gated anion channel activity, anion transport, |
| coexpression network | CFinderM000712 | anion transport, regulation_of_anion_transport protein insertion into membrane, mitochondrial outer membrane, phosphopyruvate hydratase complex, voltage-gated anion channel activity, phosphopyruvate hydratase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.