PH01000954G0660's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G07980 : 2.10E-37
Blast annotation: dentin sialophosphoprotein-related
2.Location
Scaffold: PH01000954
Strand: -
| Region | Start | End |
| gene | 441097 | 451872 |
| mRNA | 441097 | 451872 |
| exon | 441097 | 442099 |
| exon | 444127 | 444231 |
| exon | 444358 | 444605 |
| exon | 444696 | 444744 |
| exon | 444889 | 446535 |
| exon | 448290 | 448417 |
| exon | 448541 | 451872 |
| CDS | 441868 | 442099 |
| CDS | 444127 | 444231 |
| CDS | 444358 | 444605 |
| CDS | 444696 | 444744 |
| CDS | 444889 | 446535 |
| CDS | 448290 | 448417 |
| CDS | 448541 | 450739 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
| coexpression network | CFinderM001175 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.