PH01004006G0080's details annotation
1.Annotation
ICBR annotation: nucleoside-triphosphatase, putative, expressed
Blast result AT3G04080 : 3.00E-109
Blast annotation: apyrase 1
2.Location
Scaffold: PH01004006
Strand: +
| Region | Start | End |
| gene | 79447 | 84198 |
| mRNA | 79447 | 84198 |
| exon | 79447 | 80078 |
| exon | 80505 | 80633 |
| exon | 80793 | 80849 |
| exon | 80924 | 81016 |
| exon | 81147 | 81352 |
| exon | 81570 | 81661 |
| exon | 81806 | 82020 |
| exon | 82142 | 82325 |
| exon | 82456 | 84198 |
| CDS | 79815 | 80078 |
| CDS | 80505 | 80633 |
| CDS | 80793 | 80849 |
| CDS | 80924 | 81016 |
| CDS | 81147 | 81352 |
| CDS | 81570 | 81661 |
| CDS | 81806 | 82020 |
| CDS | 82142 | 82325 |
| CDS | 82456 | 82586 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000116 | nuclear chromosome, riboflavin synthase complex, riboflavin biosynthetic process, phosphoglycerate kinase activity, glycolysis, Riboflavin_metabolism |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01150.16 | GDA1_CD39 | 49 | 448 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.