PH01000145G0550's details annotation
1.Annotation
ICBR annotation: histone acetyltransferase HAC1, putative, expressed
Blast result AT1G16710 : 0.00E+00
Blast annotation: histone acetyltransferase of the CBP family 12
2.Location
Scaffold: PH01000145
Strand: -
| Region | Start | End |
| gene | 361343 | 369514 |
| mRNA | 361343 | 369514 |
| exon | 361343 | 362666 |
| exon | 362724 | 362814 |
| exon | 362918 | 362941 |
| exon | 363745 | 363896 |
| exon | 364080 | 364134 |
| exon | 364587 | 364738 |
| exon | 364922 | 364976 |
| exon | 365058 | 365136 |
| exon | 365989 | 366128 |
| exon | 366339 | 366651 |
| exon | 366745 | 366887 |
| exon | 367027 | 367227 |
| exon | 367318 | 367433 |
| exon | 368323 | 369514 |
| CDS | 362506 | 362666 |
| CDS | 362724 | 362814 |
| CDS | 362918 | 362941 |
| CDS | 363745 | 363896 |
| CDS | 364080 | 364134 |
| CDS | 364587 | 364738 |
| CDS | 364922 | 364976 |
| CDS | 365058 | 365136 |
| CDS | 365989 | 366128 |
| CDS | 366339 | 366651 |
| CDS | 366745 | 366887 |
| CDS | 367027 | 367227 |
| CDS | 367318 | 367433 |
| CDS | 368323 | 368557 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
| coexpression network | CFinderM001834 | phosphopyruvate hydratase complex, TAZ Transcription_Regulator(from iTAK) L-malate dehydrogenase activity, transcription cofactor activity, malate dehydrogenase activity, phosphopyruvate hydratase activity, histone acetyltransferase activity, malate metabolic process, cellular carbohydrate metabolic process, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08214.10 | HAT_KAT11 | 83 | 302 |
| PF00569.16 | ZZ | 429 | 454 |
| PF00569.16 | ZZ | 498 | 523 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.