CFinderM001835's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
MYB_related Transcription_Regulator(from PlantTFDB)0.000222998GFam
MYB-related Transcription_Regulator(from iTAK)0.000222998GFam
nuclear chromosome,0.008418716GO:0000228
chromatin binding,0.015458146GO:0003682

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000008G2470-- (-)
PH01000118G1190ribosomal protein L23ABAT3G55280 (1.00E-45)
PH01000244G0890sister chromatid cohesion 1 protein 4AT5G16270 (3.90E-60)
PH01000428G0040Duplicated homeodomain-like superfamily proteinAT3G52250 (1.00E-84)
PH01001295G0420Tudor/PWWP/MBT superfamily proteinAT3G03140 (5.60E-66)
PH01001505G0130-- (-)
PH01001516G0020Duplicated homeodomain-like superfamily proteinAT3G52250 (2.80E-95)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000116nuclear chromosome,
riboflavin synthase complex,
riboflavin biosynthetic process,
phosphoglycerate kinase activity,
glycolysis,
Riboflavin_metabolism
details
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
details
CFinderM000913Ribosome
translation,
Ribosome
intracellular,
cullin-RING ubiquitin ligase complex,
structural constituent of ribosome,
ubiquitin protein ligase binding,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
Ubiquitin_mediated_proteolysis
details
CFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
details
CFinderM001108RLK-Pelle_LRR-XV (from iTAK)
GT77 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
details
CFinderM001271RLK-Pelle_LysM (from iTAK)
details
CFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001689Ribosome
translation,
Jumonji Transcription_Regulator(from iTAK)
structural constituent of ribosome,
Ribosome
small ribosomal subunit,
intracellular,
details
CFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details

4.Expression profilings