PH01000244G0890's details annotation
1.Annotation
ICBR annotation: Rad21 / Rec8 like protein, putative, expressed
Blast result AT5G16270 : 3.90E-60
Blast annotation: sister chromatid cohesion 1 protein 4
2.Location
Scaffold: PH01000244
Strand: -
| Region | Start | End |
| gene | 580246 | 585566 |
| mRNA | 580246 | 585566 |
| exon | 580246 | 580933 |
| exon | 581270 | 581399 |
| exon | 581491 | 581599 |
| exon | 581915 | 581948 |
| exon | 582141 | 582976 |
| exon | 583153 | 583367 |
| exon | 583999 | 584143 |
| exon | 584220 | 584603 |
| exon | 584713 | 585566 |
| CDS | 580835 | 580933 |
| CDS | 581270 | 581399 |
| CDS | 581491 | 581599 |
| CDS | 581915 | 581948 |
| CDS | 582141 | 582976 |
| CDS | 583153 | 583367 |
| CDS | 583999 | 584143 |
| CDS | 584220 | 584603 |
| CDS | 584713 | 585463 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000116 | nuclear chromosome, riboflavin synthase complex, riboflavin biosynthetic process, phosphoglycerate kinase activity, glycolysis, Riboflavin_metabolism |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
| coexpression network | CFinderM000883 | sterol metabolic process, nuclear chromosome, cholestenol delta-isomerase activity, Nitrogen_metabolism Steroid_biosynthesis |
| coexpression network | CFinderM001835 | MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) nuclear chromosome, chromatin binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04824.15 | Rad21_Rec8 | 846 | 895 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000228 | nuclear chromosome |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.