PH01000428G1030's details annotation
1.Annotation
ICBR annotation: nuclear factor related to kappa-B-binding protein, related, putative, expressed
Blast result AT3G45830 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01000428
Strand: -
| Region | Start | End |
| gene | 699774 | 709219 |
| mRNA | 699774 | 709219 |
| exon | 699774 | 704430 |
| exon | 706341 | 706502 |
| exon | 708641 | 709219 |
| CDS | 700489 | 704430 |
| CDS | 706341 | 706502 |
| CDS | 708641 | 708910 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000117 | nuclear chromosome, Glycolysis_/_Gluconeogenesis Ino80_complex ATP citrate synthase activity, phosphoglycerate kinase activity, succinate-CoA ligase (ADP-forming) activity, |
| coexpression network | CFinderM000842 | Carbon_fixation_in_photosynthetic_organisms nuclear chromosome, Ino80_complex ribulose-phosphate 3-epimerase activity, helicase activity, phosphoglycerate kinase activity, SNF2 Transcription_Regulator(from iTAK) racemase and epimerase activity, acting on carbohydrates and derivatives, Pentose_phosphate_pathway Pentose_and_glucuronate_interconversions pentose-phosphate shunt, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0031011 | Ino80 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.