|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | ribulose-phosphate 3-epimerase activity, | 0.005105006 | GO:0004750 | | helicase activity, | 0.005105006 | GO:0004386 | | SNF2 Transcription_Regulator(from iTAK) | 0.009155108 | GFam | | racemase and epimerase activity, acting on carbohydrates and derivatives, | 0.017000739 | GO:0016857 | | pentose-phosphate shunt, | 0.02368319 | GO:0006098 | | Carbon_fixation_in_photosynthetic_organisms | 0.025298359 | KEGG | | Pentose_and_glucuronate_interconversions | 0.025298359 | KEGG | | Pentose_phosphate_pathway | 0.025298359 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000059G1540 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT1G65810 (2.00E-137) | | PH01000078G1130 | - | AT5G22450 (3.10E-85) | | PH01000492G0180 | - | AT1G09330 (1.80E-67) | | PH01000838G0200 | Aldolase-type TIM barrel family protein | AT3G01850 (3.00E-102) | | PH01001590G0380 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT2G28290 (0.00E+00) | | PH01002270G0240 | ATP-dependent helicase family protein | AT1G08060 (1.30E-88) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000116 | nuclear chromosome,
riboflavin synthase complex,
riboflavin biosynthetic process,
phosphoglycerate kinase activity,
glycolysis,
Riboflavin_metabolism
| details | | CFinderM000117 | nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
| details | | CFinderM000842 | Carbon_fixation_in_photosynthetic_organisms
nuclear chromosome,
Ino80_complex
ribulose-phosphate 3-epimerase activity,
helicase activity,
phosphoglycerate kinase activity,
SNF2 Transcription_Regulator(from iTAK)
racemase and epimerase activity, acting on carbohydrates and derivatives,
Pentose_phosphate_pathway
Pentose_and_glucuronate_interconversions
pentose-phosphate shunt,
| details | | CFinderM001520 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
| details |
4.Expression profilings |
