PH01000078G1130's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G22450 : 3.10E-85
Blast annotation: -
2.Location
Scaffold: PH01000078
Strand: -
| Region | Start | End |
| gene | 740595 | 751341 |
| mRNA | 740595 | 751341 |
| exon | 740595 | 741894 |
| exon | 742037 | 742087 |
| exon | 742231 | 742435 |
| exon | 742824 | 742881 |
| exon | 742970 | 743040 |
| exon | 743789 | 743863 |
| exon | 744556 | 745200 |
| exon | 745358 | 745456 |
| exon | 745553 | 745641 |
| exon | 745735 | 745797 |
| exon | 745931 | 746004 |
| exon | 746095 | 746850 |
| exon | 746993 | 747166 |
| exon | 747807 | 748108 |
| exon | 749097 | 749292 |
| exon | 749429 | 751341 |
| CDS | 741401 | 741894 |
| CDS | 742037 | 742087 |
| CDS | 742231 | 742435 |
| CDS | 742824 | 742881 |
| CDS | 742970 | 743040 |
| CDS | 743789 | 743863 |
| CDS | 744556 | 745200 |
| CDS | 745358 | 745456 |
| CDS | 745553 | 745641 |
| CDS | 745735 | 745797 |
| CDS | 745931 | 746004 |
| CDS | 746095 | 746850 |
| CDS | 746993 | 747166 |
| CDS | 747807 | 748108 |
| CDS | 749097 | 749292 |
| CDS | 749429 | 749634 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000843 | ribulose-phosphate 3-epimerase activity, helicase activity, SNF2 Transcription_Regulator(from iTAK) racemase and epimerase activity, acting on carbohydrates and derivatives, pentose-phosphate shunt, Carbon_fixation_in_photosynthetic_organisms Pentose_and_glucuronate_interconversions Pentose_phosphate_pathway |
| coexpression network | CFinderM001520 | SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Glycine,_serine_and_threonine_metabolism L-serine biosynthetic process, RNA metabolic process, Methane_metabolism phosphoglycerate dehydrogenase activity, glycopeptide_alpha-N-acetylgalactosaminidase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.