PH01000804G0180's details annotation
1.Annotation
ICBR annotation: mitochondrial import inner membrane translocase subunit Tim, putative, expressed
Blast result AT2G29530 : 1.60E-26
Blast annotation: Tim10/DDP family zinc finger protein
2.Location
Scaffold: PH01000804
Strand: -
| Region | Start | End |
| gene | 121746 | 125937 |
| mRNA | 121746 | 125937 |
| exon | 121746 | 122890 |
| exon | 123213 | 123251 |
| exon | 124340 | 124392 |
| exon | 124482 | 125937 |
| CDS | 122779 | 122890 |
| CDS | 123213 | 123251 |
| CDS | 124340 | 124392 |
| CDS | 124482 | 124523 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000183 | Oxidative_phosphorylation mitochondrial intermembrane space, protein import into mitochondrial inner membrane, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), copper chaperone activity, ubiquinol-cytochrome-c reductase activity, mitochondrial electron transport, ubiquinol to cytochrome c, copper ion transport, ATP synthesis coupled proton transport, ribosome biogenesis, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001030 | protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation, |
| coexpression network | CFinderM001031 | intracellular, translation, structural constituent of ribosome, protein import into mitochondrial inner membrane, Ribosome RLK-Pelle_L-LEC (from iTAK) large ribosomal subunit, ribosome biogenesis, |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001332 | protein import into mitochondrial inner membrane, mitochondrial electron transport, ubiquinol to cytochrome c, ubiquinol-cytochrome-c reductase activity, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), ATP synthesis coupled proton transport, hydrogen ion transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02953.14 | zf-Tim10_DDP | 16 | 73 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0045039 | protein import into mitochondrial inner membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.