|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | protein import into mitochondrial inner membrane, | 0.005708601 | GO:0045039 | | mitochondrial electron transport, ubiquinol to cytochrome c, | 0.01140971 | GO:0006122 | | ubiquinol-cytochrome-c reductase activity, | 0.014266819 | GO:0008121 | | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), | 0.018736525 | GO:0000276 | | ATP synthesis coupled proton transport, | 0.033180198 | GO:0015986 | | hydrogen ion transmembrane transporter activity, | 0.045519202 | GO:0015078 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000327G0560 | Translocon-associated protein (TRAP), alpha subunit | AT2G21160 (1.20E-54) | | PH01000357G0170 | FAD/NAD(P)-binding oxidoreductase | AT5G20080 (5.00E-102) | | PH01000359G0630 | NAD(P)-binding Rossmann-fold superfamily protein | AT1G05350 (1.00E-113) | | PH01000656G0620 | Ribosomal L28 family | AT4G31460 (1.40E-69) | | PH01000804G0180 | Tim10/DDP family zinc finger protein | AT2G29530 (1.60E-26) | | PH01001659G0290 | phosducin-like protein 3 homolog | AT3G50960 (2.90E-50) | | PH01002412G0260 | ATP synthase D chain, mitochondrial | AT3G52300 (1.20E-70) | | PH01002524G0200 | Ubiquinol-cytochrome C reductase hinge protein | AT1G15120 (3.00E-22) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000048 | | details | | CFinderM000183 | Oxidative_phosphorylation
mitochondrial intermembrane space,
protein import into mitochondrial inner membrane,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
copper chaperone activity,
ubiquinol-cytochrome-c reductase activity,
mitochondrial electron transport, ubiquinol to cytochrome c,
copper ion transport,
ATP synthesis coupled proton transport,
ribosome biogenesis,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM000186 | acid-amino acid ligase activity,
| details | | CFinderM000701 | nucleotide kinase activity,
adenylate kinase activity,
phosphotransferase activity, phosphate group as acceptor,
nucleobase-containing compound kinase activity,
| details | | CFinderM001018 | mitochondrial intermembrane space,
CMGC_CK2 (from iTAK)
mitochondrial electron transport, ubiquinol to cytochrome c,
copper ion transport,
ubiquinol-cytochrome-c reductase activity,
copper chaperone activity,
RNA-dependent DNA replication,
Oxidative_phosphorylation
Ribosome_biogenesis_in_eukaryotes
| details | | CFinderM001030 | protein import into mitochondrial inner membrane,
RLK-Pelle_L-LEC (from iTAK)
protein methylation,
| details | | CFinderM001031 | intracellular,
translation,
structural constituent of ribosome,
protein import into mitochondrial inner membrane,
Ribosome
RLK-Pelle_L-LEC (from iTAK)
large ribosomal subunit,
ribosome biogenesis,
| details | | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
| details | | CFinderM001455 | Amino_sugar_and_nucleotide_sugar_metabolism
CAMK_CDPK (from iTAK)
carbohydrate phosphorylation,
mitochondrial electron transport, ubiquinol to cytochrome c,
galactose metabolic process,
ubiquinol-cytochrome-c reductase activity,
galactokinase activity,
| details | | CFinderM001470 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
transcription factor TFIIF complex,
transcription from RNA polymerase II promoter,
transcription initiation from RNA polymerase II promoter,
L-phenylalanine biosynthetic process,
Basal_transcription_factors
prephenate dehydratase activity,
| details | | CFinderM001550 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
oxidoreductase activity,
hydrogen ion transmembrane transporter activity,
ATP synthesis coupled proton transport,
| details | | CFinderM001551 | carbohydrate phosphorylation,
galactokinase activity,
galactose metabolic process,
kinase activity,
| details | | CFinderM001771 | Terpenoid_backbone_biosynthesis
isoprenoid biosynthetic process,
regulation of Rab GTPase activity,
Rab GTPase activator activity,
acid-amino acid ligase activity,
| details |
4.Expression profilings |
