Gene details

Annotation of co-expression genes

PH01000656G0620's details annotation

1.Annotation

ICBR annotation: ribosomal protein L28 protein, putative, expressed

Blast result AT4G31460 : 1.40E-69
Blast annotation: Ribosomal L28 family

2.Location

Scaffold: PH01000656
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001332	protein import into mitochondrial inner membrane, mitochondrial electron transport, ubiquinol to cytochrome c, ubiquinol-cytochrome-c reductase activity, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), ATP synthesis coupled proton transport, hydrogen ion transmembrane transporter activity,
coexpression network	CFinderM001455	Amino_sugar_and_nucleotide_sugar_metabolism CAMK_CDPK (from iTAK) carbohydrate phosphorylation, mitochondrial electron transport, ubiquinol to cytochrome c, galactose metabolic process, ubiquinol-cytochrome-c reductase activity, galactokinase activity,
coexpression network	CFinderM001470	Phenylalanine,_tyrosine_and_tryptophan_biosynthesis transcription factor TFIIF complex, transcription from RNA polymerase II promoter, transcription initiation from RNA polymerase II promoter, L-phenylalanine biosynthetic process, Basal_transcription_factors prephenate dehydratase activity,
coexpression network	CFinderM001550	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), oxidoreductase activity, hydrogen ion transmembrane transporter activity, ATP synthesis coupled proton transport,
coexpression network	CFinderM001551	carbohydrate phosphorylation, galactokinase activity, galactose metabolic process, kinase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00830.18	Ribosomal_L28	47	104

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	large subunit ribosomal protein L28	ko03011	K02902

10.Gene Ontology

GO Accession	GO Annotation
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0005840	ribosome
GO:0006412	translation

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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