Annotation of co-expression genes

PH01001028G0610's details annotation

1.Annotation

ICBR annotation: OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed

Blast result AT2G26140 : 0.00E+00
Blast annotation: FTSH protease 4

2.Location

Scaffold: PH01001028
Strand: +

RegionStartEnd
gene425200430920
mRNA425200430920
exon425200425837
exon426464426551
exon426880427140
exon427805428041
exon428349428585
exon428675428799
exon429397429873
exon429950430920
CDS425811425837
CDS426464426551
CDS426880427140
CDS427805428041
CDS428349428585
CDS428675428799
CDS429397429873
CDS429950430858

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001082IWS1 Transcription_Regulator(from iTAK)
protein catabolic process,
coexpression networkCFinderM001083MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
Pseudo ARR-B Transcription_Regulator(from iTAK)
protein import into mitochondrial inner membrane,
transcription, DNA-dependent,
nucleus,
IWS1 Transcription_Regulator(from iTAK)
GNAT Transcription_Regulator(from iTAK)
coexpression networkCFinderM001405transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
Oxidative_phosphorylation
protein catabolic process,
coexpression networkCFinderM001494GRAS Transcription_Regulator(from PlantTFDB)
protein catabolic process,
coexpression networkCFinderM001618transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
protein catabolic process,
coexpression networkCFinderM001721STE_STE11 (from iTAK)
outer membrane,
Endocytosis
coexpression networkCFinderM001788protein folding,
protein catabolic process,
coexpression networkCFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
coexpression networkCFinderM001840transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
coexpression networkCFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
coexpression networkCFinderM001867Pseudo ARR-B Transcription_Regulator(from iTAK)
Riboflavin_metabolism
GTP cyclohydrolase II activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
mRNA_surveillance_pathway
riboflavin biosynthetic process,
protein catabolic process,
two-component signal transduction system (phosphorelay),

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00004.28AAA338467
PF01434.17Peptidase_M41529729

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0004222metalloendopeptidase activity
GO:0005524ATP binding
GO:0006508proteolysis
GO:0016020membrane
GO:0017111nucleoside-triphosphatase activity
GO:0030163protein catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.