PH01001117G0100's details annotation
1.Annotation
ICBR annotation: PSF2 - Putative GINS complex subunit, expressed
Blast result AT3G12530 : 2.30E-77
Blast annotation: PSF2
2.Location
Scaffold: PH01001117
Strand: +
| Region | Start | End |
| gene | 69865 | 74205 |
| mRNA | 69865 | 74205 |
| exon | 69865 | 70648 |
| exon | 70731 | 70805 |
| exon | 70891 | 71005 |
| exon | 71364 | 71463 |
| exon | 71549 | 71579 |
| exon | 71677 | 71769 |
| exon | 72299 | 72451 |
| exon | 72847 | 72908 |
| exon | 72982 | 74205 |
| CDS | 70601 | 70648 |
| CDS | 70731 | 70805 |
| CDS | 70891 | 71005 |
| CDS | 71364 | 71463 |
| CDS | 71549 | 71579 |
| CDS | 71677 | 71769 |
| CDS | 72299 | 72451 |
| CDS | 72847 | 72908 |
| CDS | 72982 | 73033 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001030 | protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation, |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001721 | STE_STE11 (from iTAK) outer membrane, Endocytosis |
| coexpression network | CFinderM001844 | PLATZ Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) microtubule, protein complex, Plant_hormone_signal_transduction Phagosome protein polymerization, microtubule-based process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05916.10 | Sld5 | 54 | 162 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006260 | DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.