CFinderM001594's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Steroid_biosynthesis0.007879616KEGG
cholestenol delta-isomerase activity,0.022416715GO:0047750
sterol metabolic process,0.026249797GO:0016125

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000023G0830histone mono-ubiquitination 1AT2G44950 (3.00E-142)
PH01000766G0350-AT1G03290 (1.00E-51)
PH01000779G0370RNA-binding (RRM/RBD/RNP motifs) family proteinAT2G44710 (9.00E-50)
PH01000980G0300glycine-rich proteinAT4G17620 (2.30E-98)
PH01001127G0260lysm domain GPI-anchored protein 1 precursorAT1G21880 (3.80E-57)
PH01001360G0070RAB GTPase homolog A4AAT5G65270 (1.60E-90)
PH01001488G0340-AT5G11700 (1.00E-120)
PH01002353G0020C-8,7 sterol isomeraseAT1G20050 (6.60E-68)
PH01002993G0180RNA-binding (RRM/RBD/RNP motifs) family proteinAT2G44710 (2.60E-58)
PH01003890G0060XB3 ortholog 2 in Arabidopsis thalianaAT5G57740 (7.00E-113)
PH01005664G0010ubiquitin-specific protease 18AT4G31670 (2.70E-69)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000623intracellular,
Ribosome
translation,
structural constituent of ribosome,
HB-other Transcription_Regulator(from PlantTFDB)
details
CFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
details
CFinderM001024poly(A)+ mRNA export from nucleus,
nuclear pore,
details
CFinderM001173HB-other Transcription_Regulator(from PlantTFDB)
details
CFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM001419nucleocytoplasmic transport,
GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
intracellular protein transport,
cellular carbohydrate metabolic process,
malate metabolic process,
GTPase activity,
GTP binding,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
intracellular,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glyoxylate_and_dicarboxylate_metabolism
Citrate_cycle_(TCA_cycle)
membrane,
details
CFinderM001788protein folding,
protein catabolic process,
details
CFinderM001812intracellular transport,
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
exonuclease activity,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details

4.Expression profilings


Show details about module gene expression profiling