PH01000023G0830's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT2G44950 : 3.00E-142
Blast annotation: histone mono-ubiquitination 1
2.Location
Scaffold: PH01000023
Strand: +
| Region | Start | End |
| gene | 535013 | 543565 |
| mRNA | 535013 | 543565 |
| exon | 535013 | 535544 |
| exon | 536371 | 536439 |
| exon | 536598 | 536678 |
| exon | 537231 | 537392 |
| exon | 539501 | 539620 |
| exon | 539717 | 539903 |
| exon | 540000 | 540157 |
| exon | 540255 | 540326 |
| exon | 540441 | 540517 |
| exon | 540865 | 541059 |
| exon | 541242 | 541314 |
| exon | 541402 | 541488 |
| exon | 542164 | 542301 |
| exon | 542379 | 542581 |
| exon | 542661 | 542826 |
| exon | 542932 | 543565 |
| CDS | 535425 | 535544 |
| CDS | 536371 | 536439 |
| CDS | 536598 | 536678 |
| CDS | 537231 | 537392 |
| CDS | 539501 | 539620 |
| CDS | 539717 | 539903 |
| CDS | 540000 | 540157 |
| CDS | 540255 | 540326 |
| CDS | 540441 | 540517 |
| CDS | 540865 | 541059 |
| CDS | 541242 | 541314 |
| CDS | 541402 | 541488 |
| CDS | 542164 | 542301 |
| CDS | 542379 | 542581 |
| CDS | 542661 | 542826 |
| CDS | 542932 | 543063 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000883 | sterol metabolic process, nuclear chromosome, cholestenol delta-isomerase activity, Nitrogen_metabolism Steroid_biosynthesis |
| coexpression network | CFinderM001024 | poly(A)+ mRNA export from nucleus, nuclear pore, |
| coexpression network | CFinderM001353 | TKL-Pl-7 (from iTAK) Others Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001594 | Steroid_biosynthesis cholestenol delta-isomerase activity, sterol metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13920.5 | zf-C3HC4_3 | 626 | 666 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.