CFinderM001024's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
poly(A)+ mRNA export from nucleus,0.000500023GO:0016973
nuclear pore,0.008967015GO:0005643

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000023G0830histone mono-ubiquitination 1AT2G44950 (3.00E-142)
PH01000766G0350-AT1G03290 (1.00E-51)
PH01000900G0010-- (-)
PH01001584G0360ARM repeat superfamily proteinAT5G22820 (4.80E-76)
PH01001946G0340Ubiquitin carboxyl-terminal hydrolase family proteinAT1G79120 (7.00E-119)
PH01003590G0040RNI-like superfamily proteinAT2G20210 (9.40E-60)
PH01003594G0040-AT1G13120 (9.40E-35)
PH01005573G0060PHD finger family proteinAT1G77800 (3.40E-47)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000623intracellular,
Ribosome
translation,
structural constituent of ribosome,
HB-other Transcription_Regulator(from PlantTFDB)
details
CFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
details
CFinderM001025NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,
details
CFinderM001668poly(A)+ mRNA export from nucleus,
SET Transcription_Regulator(from iTAK)
histone_lysine_methylation
large ribosomal subunit,
nuclear pore,
details
CFinderM001782ubiquitin-dependent protein catabolic process,
ubiquitin thiolesterase activity,
mechanically-gated_ion_channel_activity
SNF2 Transcription_Regulator(from iTAK)
details
CFinderM001812intracellular transport,
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
exonuclease activity,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details

4.Expression profilings