PH01005573G0060's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, putative, expressed
Blast result AT1G77800 : 3.40E-47
Blast annotation: PHD finger family protein
2.Location
Scaffold: PH01005573
Strand: +
| Region | Start | End |
| gene | 31885 | 42237 |
| mRNA | 31885 | 42237 |
| exon | 31885 | 32331 |
| exon | 32800 | 33053 |
| exon | 33138 | 33305 |
| exon | 33433 | 33654 |
| exon | 34621 | 34674 |
| exon | 41223 | 41591 |
| exon | 41665 | 42237 |
| CDS | 32304 | 32331 |
| CDS | 32800 | 33053 |
| CDS | 33138 | 33305 |
| CDS | 33433 | 33654 |
| CDS | 34621 | 34674 |
| CDS | 41223 | 41591 |
| CDS | 41665 | 41832 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001024 | poly(A)+ mRNA export from nucleus, nuclear pore, |
| coexpression network | CFinderM001025 | NAC Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001782 | ubiquitin-dependent protein catabolic process, ubiquitin thiolesterase activity, mechanically-gated_ion_channel_activity SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.