PH01003594G0040's details annotation
1.Annotation
ICBR annotation: EMB1745, putative, expressed
Blast result AT1G13120 : 9.40E-35
Blast annotation: -
2.Location
Scaffold: PH01003594
Strand: +
| Region | Start | End |
| gene | 23102 | 28453 |
| mRNA | 23102 | 28453 |
| exon | 23102 | 23901 |
| exon | 25784 | 25879 |
| exon | 26714 | 26797 |
| exon | 27086 | 27214 |
| exon | 27587 | 27709 |
| exon | 27790 | 28453 |
| CDS | 23722 | 23901 |
| CDS | 25784 | 25879 |
| CDS | 26714 | 26797 |
| CDS | 27086 | 27214 |
| CDS | 27587 | 27709 |
| CDS | 27790 | 28011 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001024 | poly(A)+ mRNA export from nucleus, nuclear pore, |
| coexpression network | CFinderM001668 | poly(A)+ mRNA export from nucleus, SET Transcription_Regulator(from iTAK) histone_lysine_methylation large ribosomal subunit, nuclear pore, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07817.12 | GLE1 | 77 | 225 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005643 | nuclear pore |
| GO:0016973 | poly(A)+ mRNA export from nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.