PH01001584G0360's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G22820 : 4.80E-76
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01001584
Strand: -
| Region | Start | End |
| gene | 304257 | 312223 |
| mRNA | 304257 | 312223 |
| exon | 304257 | 305246 |
| exon | 305379 | 305463 |
| exon | 305781 | 305916 |
| exon | 306381 | 306529 |
| exon | 307284 | 307410 |
| exon | 308295 | 308434 |
| exon | 308526 | 308591 |
| exon | 309634 | 309775 |
| exon | 309897 | 309991 |
| exon | 310557 | 312223 |
| CDS | 304882 | 305246 |
| CDS | 305379 | 305463 |
| CDS | 305781 | 305916 |
| CDS | 306381 | 306529 |
| CDS | 307284 | 307410 |
| CDS | 308295 | 308434 |
| CDS | 308526 | 308591 |
| CDS | 309634 | 309775 |
| CDS | 309897 | 309991 |
| CDS | 310557 | 310892 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001024 | poly(A)+ mRNA export from nucleus, nuclear pore, |
| coexpression network | CFinderM001025 | NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.