Annotation of co-expression genes

PH01002993G0180's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, expressed

Blast result AT2G44710 : 2.60E-58
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01002993
Strand: +

RegionStartEnd
gene159559164562
mRNA159559164562
exon159559160110
exon161826161915
exon161998162234
exon162339162560
exon162652162958
exon163049163383
exon163459163524
exon163749164562
CDS159688160110
CDS161826161915
CDS161998162234
CDS162339162560
CDS162652162958
CDS163049163383
CDS163459163524
CDS163749164072

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
coexpression networkCFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_177146
PF00076.21RRM_1254318

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.