Annotation of co-expression genes

PH01002353G0020's details annotation

1.Annotation

ICBR annotation: 3-beta-hydroxysteroid-Delta-isomerase, putative, expressed

Blast result AT1G20050 : 6.60E-68
Blast annotation: C-8,7 sterol isomerase

2.Location

Scaffold: PH01002353
Strand: -

RegionStartEnd
gene2132623675
mRNA2132623675
exon2132621761
exon2284722955
exon2307823224
exon2351423675
CDS2150621761
CDS2284722955
CDS2307823224
CDS2351423646

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000883sterol metabolic process,
nuclear chromosome,
cholestenol delta-isomerase activity,
Nitrogen_metabolism
Steroid_biosynthesis
coexpression networkCFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,
coexpression networkCFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05241.11EBP30204

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Steroid biosynthesischolestenol delta-isomerase [EC:5.3.3.5]ko00100K01824

10.Gene Ontology

GO AccessionGO Annotation
GO:0005783endoplasmic reticulum
GO:0016021integral to membrane
GO:0016125sterol metabolic process
GO:0047750cholestenol delta-isomerase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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