Annotation of co-expression genes

PH01000779G0370's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, expressed

Blast result AT2G44710 : 9.00E-50
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01000779
Strand: -

RegionStartEnd
gene218688228676
mRNA218688228676
exon218688219340
exon219425219534
exon219750219815
exon219891220225
exon220320220623
exon220715220936
exon221046221282
exon221329221454
exon223510223800
exon227012228676
CDS219211219340
CDS219425219534
CDS219750219815
CDS219891220225
CDS220320220623
CDS220715220936
CDS221046221282
CDS221329221454
CDS223510223800
CDS227012227545

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1400464

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.