PH01000435G0100's details annotation
1.Annotation
ICBR annotation: cytochrome c oxidase assembly protein COX15, putative, expressed
Blast result AT5G56090 : 3.00E-152
Blast annotation: cytochrome c oxidase 15
2.Location
Scaffold: PH01000435
Strand: +
| Region | Start | End |
| gene | 48814 | 55315 |
| mRNA | 48814 | 55315 |
| exon | 48814 | 49430 |
| exon | 50879 | 51195 |
| exon | 52076 | 52301 |
| exon | 52379 | 52624 |
| exon | 52714 | 52824 |
| exon | 53196 | 53327 |
| exon | 53372 | 55315 |
| CDS | 49203 | 49430 |
| CDS | 50879 | 51195 |
| CDS | 52076 | 52301 |
| CDS | 52379 | 52624 |
| CDS | 52714 | 52824 |
| CDS | 53196 | 53327 |
| CDS | 53372 | 53791 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001004 | IWS1 Transcription_Regulator(from iTAK) heme_a_biosynthetic_process threonyl-tRNA aminoacylation, tRNA aminoacylation, threonine-tRNA ligase activity, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism ligase activity, forming aminoacyl-tRNA and related compounds, oxidoreductase activity, acting on the CH-CH group of donors, Oxidative_phosphorylation nucleotide binding, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001215 | Valine,_leucine_and_isoleucine_biosynthesis heme_a_biosynthetic_process dihydroxy-acid dehydratase activity, branched chain family amino acid biosynthetic process, Pantothenate_and_CoA_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, Porphyrin_and_chlorophyll_metabolism ubiquitin ligase complex, Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001684 | heme_a_biosynthetic_process peroxisomal membrane, mitochondrial outer membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02628.14 | COX15-CtaA | 122 | 438 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | cytochrome c oxidase assembly protein subunit 15 | ko00190 | K02259 |
| Porphyrin and chlorophyll metabolism | cytochrome c oxidase assembly protein subunit 15 | ko00860 | K02259 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006784 | heme a biosynthetic process |
| GO:0016020 | membrane |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.