PH01004980G0030's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT3G51370 : 5.00E-164
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01004980
Strand: -
| Region | Start | End |
| gene | 34090 | 36966 |
| mRNA | 34090 | 36966 |
| exon | 34090 | 34456 |
| exon | 35100 | 35336 |
| exon | 36161 | 36423 |
| exon | 36570 | 36966 |
| CDS | 34202 | 34456 |
| CDS | 35100 | 35336 |
| CDS | 36161 | 36423 |
| CDS | 36570 | 36888 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001213 | Lipoic_acid_metabolism RLK-Pelle_CrRLK1L-1 (from iTAK) TKL-Pl-6 (from iTAK) lipoate biosynthetic process, chloroplast, |
| coexpression network | CFinderM001215 | Valine,_leucine_and_isoleucine_biosynthesis heme_a_biosynthetic_process dihydroxy-acid dehydratase activity, branched chain family amino acid biosynthetic process, Pantothenate_and_CoA_biosynthesis oxidoreductase activity, acting on the CH-CH group of donors, Porphyrin_and_chlorophyll_metabolism ubiquitin ligase complex, Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001655 | transport, transmembrane transport, regulation_of_cell_cycle transporter activity, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity |
| coexpression network | CFinderM001656 | GH43 Glycoside_Hydrolases TKL-Pl-6 (from iTAK) GH35 Glycoside_Hydrolases Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system |
| coexpression network | CFinderM001809 | Lipoic_acid_metabolism TKL-Pl-6 (from iTAK) chloroplast, lipoate biosynthetic process, lipoate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 80 | 324 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004722 | protein serine/threonine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.