Annotation of co-expression genes

PH01001796G0400's details annotation

1.Annotation

ICBR annotation: cyclic nucleotide-gated ion channel 1, putative, expressed

Blast result AT5G53130 : 2.00E-164
Blast annotation: cyclic nucleotide gated channel 1

2.Location

Scaffold: PH01001796
Strand: -

RegionStartEnd
gene256848261823
mRNA256848261823
exon256848258414
exon259054259290
exon260038260149
exon260247260551
exon260683261823
CDS257719258414
CDS259054259290
CDS260038260149
CDS260247260551
CDS260683260721

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001656GH43 Glycoside_Hydrolases
TKL-Pl-6 (from iTAK)
GH35 Glycoside_Hydrolases
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
coexpression networkCFinderM001699Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
coexpression networkCFinderM001706GH35 Glycoside_Hydrolases
ion transport,
coexpression networkCFinderM001751RLK-Pelle_LRR-II (from iTAK)
Arginine_and_proline_metabolism
ion transport,
phospholipid transport,
coexpression networkCFinderM001827ARID Transcription_Regulator(from iTAK)
GH17 Glycoside_Hydrolases
Arginine_and_proline_metabolism
ion transport,
coexpression networkCFinderM001828ARID Transcription_Regulator(from iTAK)
ion transport,
intracellular,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00520.30Ion_trans15162

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005216ion channel activity
GO:0006811ion transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.