PH01000102G1230's details annotation
1.Annotation
ICBR annotation: GA20734-PA, putative, expressed
Blast result AT1G02330 : 1.70E-80
Blast annotation: -
2.Location
Scaffold: PH01000102
Strand: -
| Region | Start | End |
| gene | 864085 | 870214 |
| mRNA | 864085 | 870214 |
| exon | 864085 | 864503 |
| exon | 865446 | 865603 |
| exon | 866552 | 866721 |
| exon | 866817 | 866931 |
| exon | 867040 | 867240 |
| exon | 867328 | 870214 |
| CDS | 864331 | 864503 |
| CDS | 865446 | 865603 |
| CDS | 866552 | 866721 |
| CDS | 866817 | 866931 |
| CDS | 867040 | 867240 |
| CDS | 867328 | 867401 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001656 | GH43 Glycoside_Hydrolases TKL-Pl-6 (from iTAK) GH35 Glycoside_Hydrolases Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system |
| coexpression network | CFinderM001751 | RLK-Pelle_LRR-II (from iTAK) Arginine_and_proline_metabolism ion transport, phospholipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07052.10 | Hep_59 | 87 | 180 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.