PH01000600G0290's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G24715 : 5.00E-118
Blast annotation: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
2.Location
Scaffold: PH01000600
Strand: -
| Region | Start | End |
| gene | 225848 | 237792 |
| mRNA | 225848 | 237792 |
| exon | 225848 | 226268 |
| exon | 226712 | 226826 |
| exon | 229026 | 229082 |
| exon | 229339 | 229411 |
| exon | 229724 | 229803 |
| exon | 231000 | 231041 |
| exon | 231874 | 231961 |
| exon | 232053 | 232175 |
| exon | 232309 | 232456 |
| exon | 232530 | 232693 |
| exon | 232952 | 233104 |
| exon | 233250 | 233333 |
| exon | 233408 | 237792 |
| CDS | 226178 | 226268 |
| CDS | 226712 | 226826 |
| CDS | 229026 | 229082 |
| CDS | 229339 | 229411 |
| CDS | 229724 | 229803 |
| CDS | 231000 | 231041 |
| CDS | 231874 | 231961 |
| CDS | 232053 | 232175 |
| CDS | 232309 | 232456 |
| CDS | 232530 | 232693 |
| CDS | 232952 | 233104 |
| CDS | 233250 | 233333 |
| CDS | 233408 | 235879 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001213 | Lipoic_acid_metabolism RLK-Pelle_CrRLK1L-1 (from iTAK) TKL-Pl-6 (from iTAK) lipoate biosynthetic process, chloroplast, |
| coexpression network | CFinderM001656 | GH43 Glycoside_Hydrolases TKL-Pl-6 (from iTAK) GH35 Glycoside_Hydrolases Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system |
| coexpression network | CFinderM001658 | Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism phosphatidylinositol metabolic process, phosphatidylinositol phosphate kinase activity, Phagosome cellular protein metabolic process, TKL-Pl-6 (from iTAK) |
| coexpression network | CFinderM001683 | Steroid_biosynthesis RLK-Pelle_WAK_LRK10L-1 (from iTAK) TKL-Pl-6 (from iTAK) sterol_24-C-methyltransferase_activity protein serine/threonine kinase activity, protein phosphorylation, steroid biosynthetic process, single-stranded DNA binding, protein kinase activity, transferase activity, transferring phosphorus-containing groups, TKL-Pl-4 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001809 | Lipoic_acid_metabolism TKL-Pl-6 (from iTAK) chloroplast, lipoate biosynthetic process, lipoate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 105 | 189 |
| PF07714.16 | Pkinase_Tyr | 861 | 1073 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005515 | protein binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.