PH01000244G0520's details annotation
1.Annotation
ICBR annotation: ribosomal L18p/L5e family protein, putative, expressed
Blast result AT3G25520 : 2.00E-128
Blast annotation: ribosomal protein L5
2.Location
Scaffold: PH01000244
Strand: +
| Region | Start | End |
| gene | 359376 | 363274 |
| mRNA | 359376 | 363274 |
| exon | 359376 | 359505 |
| exon | 359931 | 360011 |
| exon | 360144 | 360216 |
| exon | 360309 | 360391 |
| exon | 360517 | 360643 |
| exon | 360737 | 360816 |
| exon | 360906 | 361022 |
| exon | 361419 | 361553 |
| exon | 361781 | 361950 |
| exon | 362040 | 363274 |
| CDS | 359503 | 359505 |
| CDS | 359931 | 360011 |
| CDS | 360144 | 360216 |
| CDS | 360309 | 360391 |
| CDS | 360517 | 360643 |
| CDS | 360737 | 360816 |
| CDS | 360906 | 361022 |
| CDS | 361419 | 361553 |
| CDS | 361781 | 361950 |
| CDS | 362040 | 362151 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) sterol_24-C-methyltransferase_activity 5S rRNA binding, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis Steroid_biosynthesis steroid biosynthetic process, branched chain family amino acid metabolic process, ion transport, |
| coexpression network | CFinderM001896 | seryl-tRNA aminoacylation, serine-tRNA ligase activity, 5S rRNA binding, Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF17144.3 | Ribosomal_L5e | 15 | 176 |
| PF14204.5 | Ribosomal_L18_c | 192 | 282 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L5e | ko03011 | K02932 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0008097 | 5S rRNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.