CFinderM001587's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Valine,_leucine_and_isoleucine_biosynthesis0.003210937KEGG
Valine,_leucine_and_isoleucine_degradation0.003210937KEGG
nucleoside_diphosphate_phosphorylation0.006122562GO:0006165
branched chain family amino acid metabolic process,0.006122562GO:0009081
CTP biosynthetic process,0.006122562GO:0006241
GTP biosynthetic process,0.006122562GO:0006183
UTP biosynthetic process,0.006122562GO:0006228
nucleoside diphosphate kinase activity,0.012396924GO:0004550
branched-chain-amino-acid transaminase activity,0.012396924GO:0004084
Pantothenate_and_CoA_biosynthesis0.030934489KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000217G0400ENTH/VHS/GAT family proteinAT4G32760 (5.00E-106)
PH01000664G0050DHHC-type zinc finger family proteinAT4G24630 (8.00E-130)
PH01001067G0310Uncharacterised conserved protein (UCP012943)AT5G54540 (4.80E-22)
PH01001398G0110F-box family proteinAT5G07610 (3.90E-18)
PH01001437G0440Nucleoside diphosphate kinase family proteinAT4G09320 (4.50E-65)
PH01001442G0120branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)AT5G65780 (6.00E-108)
PH01002036G0220RING/U-box superfamily proteinAT5G60580 (2.90E-79)
PH01002290G0270Uncharacterized conserved protein (DUF2358)AT3G04890 (1.60E-44)
PH01005892G0060-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000319nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
details
CFinderM000381intracellular protein transport,
details
CFinderM000475TKL-Pl-6 (from iTAK)
carbohydrate phosphorylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
galactokinase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
fructose_6-phosphate_metabolic_process
galactose metabolic process,
Fructose_and_mannose_metabolism
Galactose_metabolism
ATP binding,
6-phosphofructokinase activity,
kinase activity,
details
CFinderM000606histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
details
CFinderM000697Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
details
CFinderM000824cytoplasm,
aromatic amino acid family metabolic process,
carbohydrate phosphorylation,
galactose metabolic process,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactokinase activity,
iron ion binding,
heme binding,
electron carrier activity,
kinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
details
CFinderM000861Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
Pantothenate_and_CoA_biosynthesis
branched chain family amino acid metabolic process,
AGC_RSK-2 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
iron-sulfur cluster assembly,
branched-chain-amino-acid transaminase activity,
details
CFinderM000915UTP biosynthetic process,
nucleoside_diphosphate_phosphorylation
CTP biosynthetic process,
GTP biosynthetic process,
regulation of actin filament polymerization,
nucleoside diphosphate kinase activity,
cytoskeleton,
Pyrimidine_metabolism
Purine_metabolism
details
CFinderM001214PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VII-2 (from iTAK)
protein complex,
microtubule,
microtubule-based process,
translational initiation,
protein polymerization,
RLK-Pelle_DLSV (from iTAK)
Phagosome
RNA_transport
details
CFinderM001536carbohydrate phosphorylation,
galactose metabolic process,
CAMK_CDPK (from iTAK)
Others Transcription_Regulator(from iTAK)
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
details
CFinderM001591Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
details
CFinderM001692TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,
details
CFinderM001699Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
details
CFinderM001708Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
details
CFinderM001769double-strand break repair,
regulation of actin filament polymerization,
DNA metabolic process,
cytoskeleton,
endonuclease activity,
exonuclease activity,
details
CFinderM001833CMGC_GSK (from iTAK)
PLATZ Transcription_Regulator(from iTAK)
nucleosome,
nucleosome assembly,
details
CFinderM001843Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
PLATZ Transcription_Regulator(from iTAK)
protein complex,
microtubule,
TRAF Transcription_Regulator(from iTAK)
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
protein polymerization,
translational initiation,
microtubule-based process,
Pantothenate_and_CoA_biosynthesis
structural constituent of cytoskeleton,
details

4.Expression profilings


Show details about module gene expression profiling