|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Valine,_leucine_and_isoleucine_biosynthesis | 0.003210937 | KEGG | | Valine,_leucine_and_isoleucine_degradation | 0.003210937 | KEGG | | nucleoside_diphosphate_phosphorylation | 0.006122562 | GO:0006165 | | branched chain family amino acid metabolic process, | 0.006122562 | GO:0009081 | | CTP biosynthetic process, | 0.006122562 | GO:0006241 | | GTP biosynthetic process, | 0.006122562 | GO:0006183 | | UTP biosynthetic process, | 0.006122562 | GO:0006228 | | nucleoside diphosphate kinase activity, | 0.012396924 | GO:0004550 | | branched-chain-amino-acid transaminase activity, | 0.012396924 | GO:0004084 | | Pantothenate_and_CoA_biosynthesis | 0.030934489 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000217G0400 | ENTH/VHS/GAT family protein | AT4G32760 (5.00E-106) | | PH01000664G0050 | DHHC-type zinc finger family protein | AT4G24630 (8.00E-130) | | PH01001067G0310 | Uncharacterised conserved protein (UCP012943) | AT5G54540 (4.80E-22) | | PH01001398G0110 | F-box family protein | AT5G07610 (3.90E-18) | | PH01001437G0440 | Nucleoside diphosphate kinase family protein | AT4G09320 (4.50E-65) | | PH01001442G0120 | branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) | AT5G65780 (6.00E-108) | | PH01002036G0220 | RING/U-box superfamily protein | AT5G60580 (2.90E-79) | | PH01002290G0270 | Uncharacterized conserved protein (DUF2358) | AT3G04890 (1.60E-44) | | PH01005892G0060 | - | - (-) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000381 | intracellular protein transport,
| details | | CFinderM000475 | TKL-Pl-6 (from iTAK)
carbohydrate phosphorylation,
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
galactokinase activity,
diphosphate-fructose-6-phosphate 1-phosphotransferase activity,
fructose_6-phosphate_metabolic_process
galactose metabolic process,
Fructose_and_mannose_metabolism
Galactose_metabolism
ATP binding,
6-phosphofructokinase activity,
kinase activity,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
| details | | CFinderM000824 | cytoplasm,
aromatic amino acid family metabolic process,
carbohydrate phosphorylation,
galactose metabolic process,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
galactokinase activity,
iron ion binding,
heme binding,
electron carrier activity,
kinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM000861 | Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
Pantothenate_and_CoA_biosynthesis
branched chain family amino acid metabolic process,
AGC_RSK-2 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
iron-sulfur cluster assembly,
branched-chain-amino-acid transaminase activity,
| details | | CFinderM000915 | UTP biosynthetic process,
nucleoside_diphosphate_phosphorylation
CTP biosynthetic process,
GTP biosynthetic process,
regulation of actin filament polymerization,
nucleoside diphosphate kinase activity,
cytoskeleton,
Pyrimidine_metabolism
Purine_metabolism
| details | | CFinderM001214 | PLATZ Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-VII-2 (from iTAK)
protein complex,
microtubule,
microtubule-based process,
translational initiation,
protein polymerization,
RLK-Pelle_DLSV (from iTAK)
Phagosome
RNA_transport
| details | | CFinderM001536 | carbohydrate phosphorylation,
galactose metabolic process,
CAMK_CDPK (from iTAK)
Others Transcription_Regulator(from iTAK)
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
| details | | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
metabolic process,
branched chain family amino acid metabolic process,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
sterol_24-C-methyltransferase_activity
branched-chain-amino-acid transaminase activity,
transferase activity, transferring pentosyl groups,
steroid biosynthetic process,
histidine biosynthetic process,
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Histidine_metabolism
Steroid_biosynthesis
| details | | CFinderM001692 | TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,
| details | | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
| details | | CFinderM001708 | Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
| details | | CFinderM001769 | double-strand break repair,
regulation of actin filament polymerization,
DNA metabolic process,
cytoskeleton,
endonuclease activity,
exonuclease activity,
| details | | CFinderM001833 | CMGC_GSK (from iTAK)
PLATZ Transcription_Regulator(from iTAK)
nucleosome,
nucleosome assembly,
| details | | CFinderM001843 | Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
PLATZ Transcription_Regulator(from iTAK)
protein complex,
microtubule,
TRAF Transcription_Regulator(from iTAK)
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
protein polymerization,
translational initiation,
microtubule-based process,
Pantothenate_and_CoA_biosynthesis
structural constituent of cytoskeleton,
| details |
4.Expression profilings |
