PH01000664G0050's details annotation
1.Annotation
ICBR annotation: zinc finger DHHC domain-containing protein, putative, expressed
Blast result AT4G24630 : 8.00E-130
Blast annotation: DHHC-type zinc finger family protein
2.Location
Scaffold: PH01000664
Strand: +
| Region | Start | End |
| gene | 28874 | 33312 |
| mRNA | 28874 | 33312 |
| exon | 28874 | 29236 |
| exon | 29546 | 29731 |
| exon | 29840 | 30133 |
| exon | 31365 | 31598 |
| exon | 32334 | 33312 |
| CDS | 29192 | 29236 |
| CDS | 29546 | 29731 |
| CDS | 29840 | 30133 |
| CDS | 31365 | 31598 |
| CDS | 32334 | 32861 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001214 | PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VII-2 (from iTAK) protein complex, microtubule, microtubule-based process, translational initiation, protein polymerization, RLK-Pelle_DLSV (from iTAK) Phagosome RNA_transport |
| coexpression network | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation nucleoside_diphosphate_phosphorylation branched chain family amino acid metabolic process, CTP biosynthetic process, GTP biosynthetic process, UTP biosynthetic process, nucleoside diphosphate kinase activity, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001833 | CMGC_GSK (from iTAK) PLATZ Transcription_Regulator(from iTAK) nucleosome, nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01529.19 | DHHC | 136 | 260 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.