|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | double-strand break repair, | 0.005155766 | GO:0006302 | | regulation of actin filament polymerization, | 0.008242138 | GO:0030833 | | DNA metabolic process, | 0.009264439 | GO:0006259 | | cytoskeleton, | 0.016280409 | GO:0005856 | | endonuclease activity, | 0.040716279 | GO:0004519 | | exonuclease activity, | 0.040716279 | GO:0004527 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000026G1700 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT5G57280 (1.80E-66) | | PH01000679G0200 | DNA repair and meiosis protein (Mre11) | AT5G54260 (3.00E-179) | | PH01001463G0180 | GTP-binding protein, HflX | AT3G49725 (7.00E-100) | | PH01001580G0220 | actin-related protein C1A | AT2G30910 (1.50E-36) | | PH01002036G0220 | RING/U-box superfamily protein | AT5G60580 (2.90E-79) | | PH01002914G0110 | XB3 ortholog 5 in Arabidopsis thaliana | AT3G23280 (2.10E-78) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000319 | nucleoside_diphosphate_phosphorylation
carbohydrate phosphorylation,
histone_H4_acetylation
UTP biosynthetic process,
CTP biosynthetic process,
histone_H2A_acetylation
GTP biosynthetic process,
aromatic amino acid family metabolic process,
chromatin remodeling,
| details | | CFinderM000387 | double-strand break repair,
DNA metabolic process,
endoplasmic reticulum,
| details | | CFinderM000606 | histone_H2A_acetylation
CTP biosynthetic process,
histone_H4_acetylation
protein neddylation,
nucleoside_diphosphate_phosphorylation
UTP biosynthetic process,
GTP biosynthetic process,
carbohydrate phosphorylation,
chromatin remodeling,
| details | | CFinderM000903 | protein neddylation,
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Ubiquitin_mediated_proteolysis
cellular protein modification process,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
Steroid_biosynthesis
GPI anchor metabolic process,
| details | | CFinderM000915 | UTP biosynthetic process,
nucleoside_diphosphate_phosphorylation
CTP biosynthetic process,
GTP biosynthetic process,
regulation of actin filament polymerization,
nucleoside diphosphate kinase activity,
cytoskeleton,
Pyrimidine_metabolism
Purine_metabolism
| details | | CFinderM001129 | nucleus,
double-strand break repair,
DNA metabolic process,
RNA_polymerase
Pyrimidine_metabolism
Purine_metabolism
| details | | CFinderM001385 | cytoskeleton,
regulation of actin filament polymerization,
carbon-sulfur lyase activity,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA_transport
| details | | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
nucleoside_diphosphate_phosphorylation
branched chain family amino acid metabolic process,
CTP biosynthetic process,
GTP biosynthetic process,
UTP biosynthetic process,
nucleoside diphosphate kinase activity,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
| details | | CFinderM001636 | GPI anchor metabolic process,
double-strand break repair,
protein folding,
nucleus,
DNA metabolic process,
exonuclease activity,
endonuclease activity,
phosphoprotein phosphatase activity,
manganese ion binding,
peptidyl-prolyl cis-trans isomerase activity,
| details | | CFinderM001692 | TKL-Pl-4 (from iTAK)
carbohydrate phosphorylation,
Ribosome
translation,
galactose metabolic process,
intracellular,
galactokinase activity,
Galactose_metabolism
Amino_sugar_and_nucleotide_sugar_metabolism
structural constituent of ribosome,
kinase activity,
| details | | CFinderM001693 | translation,
Ribosome
structural constituent of ribosome,
intracellular,
| details | | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
| details | | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lipoic_acid_metabolism
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
aromatic amino acid family biosynthetic process,
lipoate biosynthetic process,
lipoate synthase activity,
3-dehydroquinate synthase activity,
| details | | CFinderM001772 | Plant_hormone_signal_transduction
outer membrane-bounded periplasmic space,
cytoskeleton,
regulation of actin filament polymerization,
bZIP Transcription_Regulator(from PlantTFDB)
nucleosome,
| details | | CFinderM001833 | CMGC_GSK (from iTAK)
PLATZ Transcription_Regulator(from iTAK)
nucleosome,
nucleosome assembly,
| details | | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-BELL Transcription_Regulator(from iTAK)
HB-HD-ZIP Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
membrane,
| details |
4.Expression profilings |
