PH01002914G0110's details annotation
1.Annotation
ICBR annotation: ankyrin repeat domain containing protein, expressed
Blast result AT3G23280 : 2.10E-78
Blast annotation: XB3 ortholog 5 in Arabidopsis thaliana
2.Location
Scaffold: PH01002914
Strand: -
| Region | Start | End |
| gene | 65465 | 73254 |
| mRNA | 65465 | 73254 |
| exon | 65465 | 66597 |
| exon | 68270 | 68355 |
| exon | 69069 | 69171 |
| exon | 70350 | 70431 |
| exon | 70571 | 70662 |
| exon | 70745 | 70833 |
| exon | 70925 | 71005 |
| exon | 71591 | 71705 |
| exon | 71872 | 73254 |
| CDS | 65824 | 66597 |
| CDS | 68270 | 68355 |
| CDS | 69069 | 69171 |
| CDS | 70350 | 70431 |
| CDS | 70571 | 70662 |
| CDS | 70745 | 70833 |
| CDS | 70925 | 71005 |
| CDS | 71591 | 71705 |
| CDS | 71872 | 71913 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000319 | nucleoside_diphosphate_phosphorylation carbohydrate phosphorylation, histone_H4_acetylation UTP biosynthetic process, CTP biosynthetic process, histone_H2A_acetylation GTP biosynthetic process, aromatic amino acid family metabolic process, chromatin remodeling, |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
| coexpression network | CFinderM001692 | TKL-Pl-4 (from iTAK) carbohydrate phosphorylation, Ribosome translation, galactose metabolic process, intracellular, galactokinase activity, Galactose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism structural constituent of ribosome, kinase activity, |
| coexpression network | CFinderM001693 | translation, Ribosome structural constituent of ribosome, intracellular, |
| coexpression network | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lipoic_acid_metabolism HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) aromatic amino acid family biosynthetic process, lipoate biosynthetic process, lipoate synthase activity, 3-dehydroquinate synthase activity, |
| coexpression network | CFinderM001769 | double-strand break repair, regulation of actin filament polymerization, DNA metabolic process, cytoskeleton, endonuclease activity, exonuclease activity, |
| coexpression network | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13637.5 | Ank_4 | 58 | 106 |
| PF13920.5 | zf-C3HC4_3 | 435 | 481 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.