PH01001442G0120's details annotation
1.Annotation
ICBR annotation: aminotransferase domain containing protein, putative, expressed
Blast result AT5G65780 : 6.00E-108
Blast annotation: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
2.Location
Scaffold: PH01001442
Strand: -
| Region | Start | End |
| gene | 133100 | 137959 |
| mRNA | 133100 | 137959 |
| exon | 133100 | 133521 |
| exon | 134255 | 134353 |
| exon | 134636 | 134767 |
| exon | 134876 | 135052 |
| exon | 135150 | 135324 |
| exon | 135460 | 135548 |
| exon | 136565 | 137959 |
| CDS | 133399 | 133521 |
| CDS | 134255 | 134353 |
| CDS | 134636 | 134767 |
| CDS | 134876 | 135052 |
| CDS | 135150 | 135324 |
| CDS | 135460 | 135548 |
| CDS | 136565 | 136678 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000697 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation |
| coexpression network | CFinderM000861 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis Pantothenate_and_CoA_biosynthesis branched chain family amino acid metabolic process, AGC_RSK-2 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) iron-sulfur cluster assembly, branched-chain-amino-acid transaminase activity, |
| coexpression network | CFinderM001587 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation nucleoside_diphosphate_phosphorylation branched chain family amino acid metabolic process, CTP biosynthetic process, GTP biosynthetic process, UTP biosynthetic process, nucleoside diphosphate kinase activity, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001591 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation metabolic process, branched chain family amino acid metabolic process, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity branched-chain-amino-acid transaminase activity, transferase activity, transferring pentosyl groups, steroid biosynthetic process, histidine biosynthetic process, HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) Pantothenate_and_CoA_biosynthesis Histidine_metabolism Steroid_biosynthesis |
| coexpression network | CFinderM001699 | Valine,_leucine_and_isoleucine_biosynthesis Valine,_leucine_and_isoleucine_degradation HB-other Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) sterol_24-C-methyltransferase_activity 5S rRNA binding, endodeoxyribonuclease activity, producing 5'-phosphomonoesters, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis Steroid_biosynthesis steroid biosynthetic process, branched chain family amino acid metabolic process, ion transport, |
| coexpression network | CFinderM001708 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001843 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis PLATZ Transcription_Regulator(from iTAK) protein complex, microtubule, TRAF Transcription_Regulator(from iTAK) branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, protein polymerization, translational initiation, microtubule-based process, Pantothenate_and_CoA_biosynthesis structural constituent of cytoskeleton, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01063.18 | Aminotran_4 | 127 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 303 Valine, leucine and isoleucine biosynthesis | branched-chain amino acid aminotransferase [EC:2.6.1.4] | K00826 | |
| Pantothenate and CoA biosynthesis | branched-chain amino acid aminotransferase [EC:2.6.1.4] | ko00770 | K00826 |
| 281 Valine, leucine and isoleucine degradation | branched-chain amino acid aminotransferase [EC:2.6.1.4] | K00826 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004084 | branched-chain-amino-acid transaminase activity |
| GO:0008152 | metabolic process |
| GO:0009081 | branched-chain amino acid metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.