CFinderM001529's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Fanconi_anaemia_nuclear_complex0.000562535GO:0043240
DNA repair,0.01971694GO:0006281
Ubiquitin_mediated_proteolysis0.025238006KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000379G0730HAD-superfamily hydrolase, subfamily IG, 5-nucleotidaseAT2G23890 (7.10E-83)
PH01000949G0560pumilio 2AT2G29190 (0)
PH01001135G0290zinc ion bindingAT5G65740 (3.20E-50)
PH01003244G0180XB3 ortholog 5 in Arabidopsis thalianaAT3G23280 (3.10E-79)
PH01004502G0120Galactose oxidase/kelch repeat superfamily proteinAT1G22040 (4.00E-153)
PH01007532G0010RNA-binding protein 45AAT5G54900 (2.10E-92)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000717tRNA processing,
details
CFinderM000998Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
details
CFinderM001108RLK-Pelle_LRR-XV (from iTAK)
GT77 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
Phosphatidylinositol_signaling_system
Inositol_phosphate_metabolism
details
CFinderM001287cellular process,
homocysteine S-methyltransferase activity,
Cysteine_and_methionine_metabolism
details
CFinderM001409Whirly Transcription_Regulator(from PlantTFDB)
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
phosphatidylinositol N-acetylglucosaminyltransferase activity,
GPI anchor biosynthetic process,
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001592DNA_ligation_involved_in_DNA_repair
DNA_ligase_activity
DNA ligase (ATP) activity,
regulation_of_cell_cycle
DNA recombination,
C3H Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
Mismatch_repair
Base_excision_repair
Nucleotide_excision_repair
DNA_replication
DNA binding,
details
CFinderM001633TALE Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
Peroxisome
details
CFinderM001655transport,
transmembrane transport,
regulation_of_cell_cycle
transporter activity,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
details
CFinderM001657Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
phosphatidylinositol metabolic process,
Phagosome
cellular protein metabolic process,
phosphatidylinositol phosphate kinase activity,
aspartic-type endopeptidase activity,
GH35 Glycoside_Hydrolases
phospholipid transport,
proteolysis,
metal ion binding,
details
CFinderM001699Valine,_leucine_and_isoleucine_biosynthesis
Valine,_leucine_and_isoleucine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
sterol_24-C-methyltransferase_activity
5S rRNA binding,
endodeoxyribonuclease activity, producing 5'-phosphomonoesters,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
Steroid_biosynthesis
steroid biosynthetic process,
branched chain family amino acid metabolic process,
ion transport,
details
CFinderM001708Valine,_leucine_and_isoleucine_degradation
Valine,_leucine_and_isoleucine_biosynthesis
branched chain family amino acid metabolic process,
branched-chain-amino-acid transaminase activity,
Pantothenate_and_CoA_biosynthesis
details
CFinderM001781RLK-Pelle_LRR-XV (from iTAK)
RNA_degradation
copper ion transport,
C3H Transcription_Regulator(from PlantTFDB)
copper-transporting_ATPase_activity
protein binding,
details
CFinderM001884single-stranded DNA binding,
DNA_replication
RNA processing,
details

4.Expression profilings