PH01004502G0120's details annotation
1.Annotation
ICBR annotation: OsFBK9 - F-box domain and kelch repeat containing protein, expressed
Blast result AT1G22040 : 4.00E-153
Blast annotation: Galactose oxidase/kelch repeat superfamily protein
2.Location
Scaffold: PH01004502
Strand: -
| Region | Start | End |
| gene | 70232 | 72009 |
| mRNA | 70232 | 72009 |
| exon | 70232 | 72009 |
| CDS | 70487 | 71869 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001108 | RLK-Pelle_LRR-XV (from iTAK) GT77 GlycosylTransferases C3H Transcription_Regulator(from PlantTFDB) Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism |
| coexpression network | CFinderM001529 | Fanconi_anaemia_nuclear_complex DNA repair, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001568 | FAR1 Transcription_Regulator(from PlantTFDB) RLK-Pelle_LRR-XV (from iTAK) |
| coexpression network | CFinderM001657 | Inositol_phosphate_metabolism Phosphatidylinositol_signaling_system phosphatidylinositol metabolic process, Phagosome cellular protein metabolic process, phosphatidylinositol phosphate kinase activity, aspartic-type endopeptidase activity, GH35 Glycoside_Hydrolases phospholipid transport, proteolysis, metal ion binding, |
| coexpression network | CFinderM001708 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, Pantothenate_and_CoA_biosynthesis |
| coexpression network | CFinderM001781 | RLK-Pelle_LRR-XV (from iTAK) RNA_degradation copper ion transport, C3H Transcription_Regulator(from PlantTFDB) copper-transporting_ATPase_activity protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 44 | 82 |
| PF01344.24 | Kelch_1 | 173 | 217 |
| PF01344.24 | Kelch_1 | 221 | 269 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.