PH01000379G0730's details annotation
1.Annotation
ICBR annotation: 5-nucleotidase domain-containing protein, putative, expressed
Blast result AT2G23890 : 7.10E-83
Blast annotation: HAD-superfamily hydrolase, subfamily IG, 5-nucleotidase
2.Location
Scaffold: PH01000379
Strand: -
| Region | Start | End |
| gene | 535031 | 542749 |
| mRNA | 535031 | 542749 |
| exon | 535031 | 535406 |
| exon | 535768 | 536085 |
| exon | 537208 | 537252 |
| exon | 537687 | 537776 |
| exon | 538224 | 538287 |
| exon | 538550 | 538647 |
| exon | 539496 | 539573 |
| exon | 540736 | 540837 |
| exon | 541159 | 541308 |
| exon | 541407 | 541543 |
| exon | 541641 | 541793 |
| exon | 541889 | 542749 |
| CDS | 535377 | 535406 |
| CDS | 535768 | 536085 |
| CDS | 537208 | 537252 |
| CDS | 537687 | 537776 |
| CDS | 538224 | 538287 |
| CDS | 538550 | 538647 |
| CDS | 539496 | 539573 |
| CDS | 540736 | 540837 |
| CDS | 541159 | 541308 |
| CDS | 541407 | 541543 |
| CDS | 541641 | 541793 |
| CDS | 541889 | 541973 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001529 | Fanconi_anaemia_nuclear_complex DNA repair, Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05761.13 | 5_nucleotid | 81 | 235 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.